FastQCFastQC Report
Sun 20 Nov 2022
CO_044-2-1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCO_044-2-1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences267
Sequences flagged as poor quality0
Sequence length26-331
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG103.7453183520599254No Hit
GGTCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG82.9962546816479403No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCG82.9962546816479403No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCGCG82.9962546816479403No Hit
TCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG82.9962546816479403No Hit
GGTAGGATTACTAGCTAATAGCAATCTATTTCAAAGAATTCAAACTTGGG72.6217228464419478No Hit
ATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG72.6217228464419478No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCGCGAC62.247191011235955No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCGCGACC51.8726591760299627No Hit
CGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG51.8726591760299627No Hit
ACCGACTGCCCATAGAGAGGCTGAGACTGCCAAGGCACACAGGGGATAGG31.1235955056179776No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATT31.1235955056179776No Hit
CAACCAAGGGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAG31.1235955056179776No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAAT31.1235955056179776No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCAT31.1235955056179776No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCGCGA31.1235955056179776No Hit
GACGTGTTCGAGGAACGGCGCGGGATCTTCGTTCTCGAAAACCTCGGACT20.7490636704119851No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAA20.7490636704119851No Hit
GTTGGAGTTGGTACTTTCAGTGGTAGTAGCATTAGTGTTGGAGTTGGTAC20.7490636704119851No Hit
GTGCGTGGTCCGTCTGCCCTTCTCCTGGGGATACGACGGCGCAGGAG20.7490636704119851No Hit
GCTTCCTTATTAAGTTTGGTCATTGGACTACCATTATCGTAGTAATTATT20.7490636704119851No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCA20.7490636704119851No Hit
ATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAGAGACTAGTGGCAAT20.7490636704119851No Hit
AATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG20.7490636704119851No Hit
GATCATGTCCACGACGGTGGGCGAGACTGGGGCCGACTATCTGGCGGTGC20.7490636704119851No Hit
TTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG20.7490636704119851No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAAT20.7490636704119851No Hit
GGCCTCGGCGACATCGTCGATCTGCAACGAGACGGAGATGCCCTGCGGCT20.7490636704119851No Hit
CGGTCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG20.7490636704119851No Hit
AAACACCCAAAAATGGATGATGGATTTGTTACGTTTGAATTAGAACCAGA20.7490636704119851No Hit
CGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG20.7490636704119851No Hit
ATTGCCACTAGTCTCTGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAA20.7490636704119851No Hit
TTCCATGGCCGCCTCCCTAATGTTACACACTGACTAGAGACTAGTGGCAAT20.7490636704119851No Hit
TCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAGAGACTAGTGGCAAT20.7490636704119851No Hit
GCAGCAGGTCTCCAAGGTGAACAGCCTCTGGCATGTTGGAACAGTGTGTAACATTAGGGAGGCGGCCATGG20.7490636704119851No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCG20.7490636704119851No Hit
GGCAAACCACGCCGCAACCAGCGCGGCATCGAGACCGAGAAACGCAAGCG20.7490636704119851No Hit
AATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAGAGACTAGTGGCAAT20.7490636704119851No Hit
GCCATACTAAATTGCACATTGAAAATGTCACTAATATAAGTAAATTCTCG20.7490636704119851No Hit
TGGCAAGCTGAATACAGATTATCAACGACAATTACATATAACCTACAAAC20.7490636704119851No Hit
GACAGTTTGGCAAACCGCGGCTTGGAGTTAAGGCCGGTCCCTACCGCCGT10.37453183520599254No Hit
CTTGTACGCGTAAAGCAGGAATTCCCGCCCGCTCATCAATTCGGGTGCCG10.37453183520599254No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGA10.37453183520599254No Hit
CTTTGCTGGCATCATCGATAATGAAGTGGAAAATGTCCATGTTAGTGCCC10.37453183520599254No Hit
CAGAGCCTGATCGCCTTCCCCGACGGCTGCGCCTATCGCCGCGTCCTGCA10.37453183520599254No Hit
CATACAAGTGAAAGTACACGCAAATATCCTTATCCTTTCATTCATCGAATGCTTGC10.37453183520599254No Hit
ACCATCAGTAAAATTGCTTGCTCAAATATTAAGCCAAGTTATAATCAAGT10.37453183520599254No Hit
TAAGAGGTCCAAATATCCACTTGCAGACTTTACAAACACAGGGTTTCCAG10.37453183520599254No Hit
GTAATGGGTACACCCATTGGAATCTGGTTTTCTCATCTGTAAACGATATA10.37453183520599254No Hit
AGAAAAAGGGAAACTGAAGGGAGGATAGTAGTAAAGTTTGAATGGTGGTAGTGTAATGTATGATATCC10.37453183520599254No Hit
GCAGCAGGGCAACACGCCGCTCAGCGCACCGATCACGATGGCGCCATTCG10.37453183520599254No Hit
CTAGCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCGCGA10.37453183520599254No Hit
AATCCATGCCGCCTCCCTATGTTACACACTGACTAGAGACTAGTGGCAAT10.37453183520599254No Hit
AACAGCATTTACAACTATTTGTATAGCATATACTATGTAACAGTATAACA10.37453183520599254No Hit
CTAAGGGCTGGGTCGGTCGGGCAGGTGTAACATTAGGGAGGCGGCTATGGAAT10.37453183520599254No Hit
CTCTACATTTGCGATATTTTGCAAAAAAGCTATTTGCCTTTCTGAAAACT10.37453183520599254No Hit
GAATGACAAGGAACTTTATGAATTGGAGCTGTAAGTTAACTCTTTGACAG10.37453183520599254No Hit
CGGAAATTTGGGGGGTGCTAGATCTCTTCTTTGATGGAAGAATATTAGAT10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCATGGAATTCGCGAC10.37453183520599254No Hit
AGAATGTACATCTTAAAAACTTTTTTTAAAAACTCTGTACAATATAATCC10.37453183520599254No Hit
CAAGAAACAATACGATACAAAGATAATAAATCTGGGTGAAAGTGATAACG10.37453183520599254No Hit
CAACCGACTGCCCATAGAGAGGCTGAGAAC10.37453183520599254No Hit
CTATCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTCGCGAC10.37453183520599254No Hit
ATCAAATGCCCTTCCCTTTCAACAATTTCACGTACTTTTTCACTCTCTTT10.37453183520599254No Hit
TCGCGAATTCCATGGTCGCCTCCCCAGTGTGTAACATTAGGGAGGCG10.37453183520599254No Hit
TCGCGAATTCCATGGTCGCCTCCCCAGTCGTGTAACATTAGGGAGGCG10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGACCATGGAATTCGCGAC10.37453183520599254No Hit
GAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGGGG10.37453183520599254No Hit
CTAGTCAGTGTGTACATTAGGGAGGCGGCCATGGAATTCGC10.37453183520599254No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCA10.37453183520599254No Hit
GGCCTCGCGCGCACGTTCTGCGAGAAGGAGATCAAGCCGCATATCGAGAC10.37453183520599254No Hit
AACACTTTTATAAGCACTGCTTATAGGGAATTTTTGACAAATCTCTGCAC10.37453183520599254No Hit
ACTATGTTTGGTATGCAAATATTATTATTAAACTTAACACCAGTTGTTAA10.37453183520599254No Hit
CGGATTGCGTCTCGATCAGGCGGCGCGTCCATCGCCGTGACGTGGTTG10.37453183520599254No Hit
GTCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAGAGACTAGTGGCAAT10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTTAGGGAGGGCGGCCATGGAATTCG10.37453183520599254No Hit
GGCATCATTCTATACGTGTCATTCTGAACGAGGCGCGCTTTCCTTTTTTC10.37453183520599254No Hit
CTCAATACTGCCGCCGAAATTCTGTCCCACATACTAAATCTCTTCCCGTCATTATCGC10.37453183520599254No Hit
GCAGCAGGTCTCCAAGGTGAACAGCCTCTGGCATGTTGGAACAGTGTGTAACAT10.37453183520599254No Hit
CGGGTAACTGGAGATGGAAATTTTCAGAAAAATTGTAAATGGATGCGATG10.37453183520599254No Hit
AGAGAAGTTTTATCATCATGATTTTAAATGAATAAAATAGGACGGGCGCG10.37453183520599254No Hit
CAAACATAAGCATGCATTTCTCTGTTTGTTTTTGTTACCTTCTCTTGCCA10.37453183520599254No Hit
CTGGAATTCATTTTCCACGTTCTAGCATTCAAGGTCCCATTCGGGGCTGA10.37453183520599254No Hit
CTACCGTCACGCTTCTATCTCCTTGCCGTTTTTGGCCTGCTGGCCACCGT10.37453183520599254No Hit
CGAATTCCATGGCCGCCTCCCTAATGTTCACACTGACTAG10.37453183520599254No Hit
TTGAAAGAGAAGAACAAGGACTTGGAGCAAGAGAACGTCGAAAAGGAGAA10.37453183520599254No Hit
CGGCTTGCCGGCGAAATGCCAGGCGAGATCCTCCATGCCCTCGGCAAGCA10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATG10.37453183520599254No Hit
CCAACAACACCTGCCCACTGAAATTTAATTTGTTTTCCTTTTGGTTGGTCTTTT10.37453183520599254No Hit
GGTGGGGTGGTGCGCACCTGTAATTCCAGCTACTCAGGAGGCTAAGGCAG10.37453183520599254No Hit
TTATGCTTTTTGACAAGAAATCCATCAATATAAACAAAAGATTGTCCAGT10.37453183520599254No Hit
ATGGCCGCCTCCCTAATGTTACACACTGACTAG10.37453183520599254No Hit
AGAGTTGTTTAATTTGACAAATTCGCTGGTTATTGGGGTTAAAATTGAGG10.37453183520599254No Hit
ATCCATGGCCGCCTCCCTAATGTTACACACTGACTAG10.37453183520599254No Hit
GCCACCTCCCTAATGTTACACACTGGGGAGGTGGCCATGGAATTCGCGA10.37453183520599254No Hit
GGCAAACCACGCCGCAACCGCGCGGCATCGAGACCGAGAAACGCAAGCGC10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTC10.37453183520599254No Hit
CTTGCCAGCCAGCTGGAATACCTTCCTTGTCAGTGACAGTCTTGGTGTTG10.37453183520599254No Hit
CCAGGCTCTGCTTGCCGATATTGAGTTGGCCGAACGCGGTCGAGCAGTTG10.37453183520599254No Hit
ACACCGAACTGCCCATAAAGTAGAGGGCTGAGACGTGACCAAGGCACTACTAGGGGAT10.37453183520599254No Hit
CCATTCTTCTTGTGCAGTGGGTCAATGTCATCCTCCTCCTCCTCGTCTTT10.37453183520599254No Hit
CGAATTCCATGGCCGCCCTCCCCTAATGTTACACACTGACTAG10.37453183520599254No Hit
CAAGGCATTCCCCCAAGTTTGAATTCTTTGAAATAGATTGCTATTAGCTAGTAATCCTACC10.37453183520599254No Hit
ATTCCATGGCCGCCCTCCCCTAATGTTACACACTGATAGAGACTAGTGGCAAT10.37453183520599254No Hit
GCAGCCAATCCTAAGACACCTAAGTAATCACCGACTGC10.37453183520599254No Hit
CTAGTCAGTGTGTAAATTAGGGAGGCGGCCATGGAATTCG10.37453183520599254No Hit
GGTGGTAGTTATGGTCACGGCTGTAGTTAGGGTCATGGTGGTAGTTAGGGTCGTGTGG10.37453183520599254No Hit
CAGGGCGTCGGCGTCGGAGGTGACCTCCGGCAGACCTTCGCGTGGTTTGCC10.37453183520599254No Hit
GTCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGTACTAAG10.37453183520599254No Hit
TTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTAT10.37453183520599254No Hit
CGGATGTGCAGCGCCGGCAGCAGATCGGCATGGCCAGTTTCCCGCTGCCG10.37453183520599254No Hit
CACCGACTTGCCCATAAGGCAGAGGC10.37453183520599254No Hit
TTTCATGTTCTGTTTCGACCTACCTCTTGTAAATGACAAATCACCTTTTTCATCGTATGCACCTTATTCTCC10.37453183520599254No Hit
GCGAATTCCATGGCCGCCTCCCTAATGTTACACC10.37453183520599254No Hit
AGAATCCCTACATAATAATATATCAAATCTACCGTCTGGAACATCATCGC10.37453183520599254No Hit
GACAGCTTTGAAGACATATCCAAAAGCTGCTGCTTGGTCACTATTAGTTT10.37453183520599254No Hit
ATATGCGCTCGGAAATGCTCGGCTCGATGGCCAAGATGGGCGTCAAGGTCGAGAAGCATCATCACGAAG10.37453183520599254No Hit
TCTAGTGTTTCCAAATCAACGGTGAAAAAAATCTCGTATGAAGTCCAACA10.37453183520599254No Hit
CCACAACACTGCAATTGTCAATAATTGACAATTATTATAATCAATAATAA10.37453183520599254No Hit
CCCTGTGAATTCGTGCAACTTACGTTTTTGATAAAGCCCAGGTCACCAGT10.37453183520599254No Hit
GTCGCGAATTCCATGGCCGCCTCCCTAATGTTACACACTGCTTAGCGGAT10.37453183520599254No Hit
GCCAATCCTTATCCCGAAGTTACGGATCTATTTTGCCGACTTCCCTTATC10.37453183520599254No Hit
GAATTCCATGGCCGCCTCCCTAATGTTACACACTGACTAG10.37453183520599254No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGAATTC10.37453183520599254No Hit
GAGATTAAGCCTTTGTTGTCTGATTTGTTTTTTATTTCTTTCTAAGTGGG10.37453183520599254No Hit
GTTTTTCGTAGTATATGACAATAATAACTCGAATTCTGCTAAGAGAACAT10.37453183520599254No Hit
GACAGTTTGGCCTTCTCGGCTTCAGGATATGCGGTCGTCGTCGTGTTGCC10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTAGGGAGGCGGCCATGGATTCGCGAC10.37453183520599254No Hit
GAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGA10.37453183520599254No Hit
ATAACGAGGATGTTTACAGGTTGTACTTTGAAGAAGAAATAGCGATCTTC10.37453183520599254No Hit
GGCAAACCACTAAAAGGATGGCCCCAAATCAAAGATCACGTTCGCTTCTG10.37453183520599254No Hit
GTATTTCCCCCGAACCTGACGCAACCTCAGCGTTACTGATTGCTTCAGGG10.37453183520599254No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATAGGGAGGCGGCCATGGAATCGCGA10.37453183520599254No Hit
TGGCCGCCTCCCTAATGTTACACACTGACTAGAGACTAGTGGCAAT10.37453183520599254No Hit
ACGCCAAGCTCGTGTTCTGCGACGACGCGAGCAAGAAGGATGTGCCTCAC10.37453183520599254No Hit
TCAATTGTTGTTGCAGGATCGGTGAATGGCACTGGTACTTTGTTTGTGAA10.37453183520599254No Hit
ATGGTTAACTACTTCTTGCAGGGCGACCCTTATCAGGGGATGGTCCACTT10.37453183520599254No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGG10.37453183520599254No Hit
TGGCCGCCTCCCTAATGTACACACTGGGAGGCGGCCATGGAATTCGCGAC10.37453183520599254No Hit
AAGAACTCCATTACAGTAAAATTTTGTGTAATTAGCGTATCCTTGCTTTC10.37453183520599254No Hit
CAAAAGCACTCTTCCTGAGTTGTTTTACTTTTTCTTTTGTGAAATTACTG10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTAGGGAGCGGCCATGGAATTCGCGAC10.37453183520599254No Hit
CCATTCGATTCCATTCGATGATTCCATTCAATTCCATTCTCCGATGATTT10.37453183520599254No Hit
CTGAAGCGTATTTCCGTCACCGAAAAAGGCAGAAAAAGGGAAACTGAAGG10.37453183520599254No Hit
ATGGCCATCAACCGACGTATGTAACGAATGGTAAGTTCCAATTTAGACGT10.37453183520599254No Hit
CGGCAATACGCGGCGCGATCTGGTCGAGGCCGCCTACACGCTCGGCGCCAGCGA10.37453183520599254No Hit
GGAATTACCTTGATTTTTTCGGCATCACAAAGTTCGAGAACACATCAAAT10.37453183520599254No Hit
ATAGCAGAAGCTCGTATCAGTTTTATGAGGTAAAGCGAATGATTAGAGGT10.37453183520599254No Hit
TAATTCACCCTGCAAAATAATATTCATAAGGAAACTTAAATCTTTTTGAG10.37453183520599254No Hit
AAAGCACCCAAGCCACTGCATTGCACCATGTGTCTGCACCTATGTCATCT10.37453183520599254No Hit
GCAGCAGGTCTCCAAGGTGAACAGCCTCTGGCATGTTGGAACAGTGTGTAACATTAGGGAGGCGGCCATGGAAT10.37453183520599254No Hit
GCAAAGGCACAGGCTAGTGCCCGTGCGAGTGCATCCGGTACCACCCCAGATGCTGTAGTAGCTT10.37453183520599254No Hit
GGTCGCGAATTCCATGGCCGCCTCCCTAATGTTAC10.37453183520599254No Hit
AACATTAGGGAGGCGGCCATGGAATTCGCG10.37453183520599254No Hit
CAACAACACCTGCATCAACACTAACGTCAACACACACCTCTGTCCCGTTA10.37453183520599254No Hit
TGTTACACACTGGGAGGCGGCCATGGAATTCGCGACC10.37453183520599254No Hit
CGAAGAACGCCTTGCGATCATCCGGCACCGGACCGTTGCCGGCAGGCAATGCGAAATTCGGCG10.37453183520599254No Hit
TACTCATTTCTTTCTTTTTTCTTTTTTTCTTTTTTTTTCTTTTTTGAGAC10.37453183520599254No Hit
CCGAGCTGGGATTACTGGCGGCAGATTTTCTGGAGTTCGGGGATCGACAT10.37453183520599254No Hit
ATCTTTAAACAGCCCCTGATTTTCAATCATTTCAGCTACTTCATTGGGCT10.37453183520599254No Hit
CAAGTTTGCGCGAGCTGAGCTCCATGTGGTGGACGCGGGTCATTGGGTGC10.37453183520599254No Hit
ATTGCCACTAGTCTCTAGTCAGTGTGTAACATTAGGGAGGCGG10.37453183520599254No Hit
CAAAGCCCAGAATGACACAGGAGAAGAACTGCTGCTTGAGAGACGGGTTT10.37453183520599254No Hit
CTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACA10.37453183520599254No Hit
CTAGTCAGTGTGTAACATTAGGGAGCGG10.37453183520599254No Hit
TTATAATGTCGTTCTCCTTACTACAGACCCGCCTGAAAGTAGACACATCA10.37453183520599254No Hit
AGTAAAGACATTTATGCATTGCCTCTTTATACTTTCTATAGTCCCTCCTT10.37453183520599254No Hit
CTAGTCAGTGTGTAACATAGGGAGGCGGCCATGGAATTCGCGA10.37453183520599254No Hit
CATGGCCGCCTCCCTAATGTTACACACTGACTAG10.37453183520599254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)